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A Kinetic Model of the Inositol Trisphosphate Receptor Based on Single-Channel Data

机译:基于单通道数据的肌醇三磷酸受体的动力学模型

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摘要

In many cell types, the inositol trisphosphate receptor is one of the important components controlling intracellular calcium dynamics, and an understanding of this receptor is necessary for an understanding of calcium oscillations and waves. Based on single-channel data from the type-I inositol trisphosphate receptor, and using a Markov chain Monte Carlo approach, we show that the most complex time-dependent model that can be unambiguously determined from steady-state data is one with three closed states and one open state, and we determine how the rate constants depend on calcium. Because the transitions between these states are complex functions of calcium concentration, each model state must correspond to a group of physical states. We fit two different topologies and find that both models predict that the main effect of [Ca2+] is to modulate the probability that the receptor is in a state that is able to open, rather than to modulate the transition rate to the open state.
机译:在许多细胞类型中,肌醇三磷酸受体是控制细胞内钙动力学的重要成分之一,因此必须了解该受体才能理解钙的振荡和波动。基于来自I型肌醇三磷酸受体的单通道数据,并使用马尔可夫链蒙特卡罗方法,我们表明可以从稳态数据中明确确定的最复杂的时间依赖性模型是具有三个闭合状态的模型和一个开放状态,我们确定速率常数如何取决于钙。由于这些状态之间的转换是钙浓度的复杂函数,因此每个模型状态必须对应于一组物理状态。我们拟合了两种不同的拓扑,发现这两种模型都预测[Ca2 +]的主要作用是调节受体处于能够打开状态的概率,而不是调节向打开状态的转变速率。

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